Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------QSPPPPQCDPGLLSP-CAAPIFFGTAPSASCCSSLKAQ-QGCFCQYAKDPMYASYINSTNARKMIAACGIPLPNCG---------
1UFW Chain:A ((1-95))
GSSGSSGSSFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKVKGRAVKISGPSSG
General information:
TITO was launched using:
RESULT:
Template:
1UFW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19444 for 480 contacts (-40.5/contact) +
2D Compatibility (PS) -7792 + (NN) -3359 + (LL) 0
1D Compatibility (HY) -4800 + (ID) 550
Total energy: -35945.0 ( -74.89 by residue)
QMean score : 0.319
(partial model without unconserved sides chains):
PDB file :
Tito_1UFW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UFW-query.scw
PDB file :
Tito_Scwrl_1UFW.pdb
: