Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------LTCDDV--NNNLISCLSYVA----------------------GGGKVPTSCCSGVKNLLSLAKTRNDRQTACSCLKSLAVEANNDQ----------LKRAQTVPKSCSLTIPFPISRDVDCSKVK
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVR-CMRQTRTN------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35765 for 574 contacts (-62.3/contact) +
2D Compatibility (PS) -7806 + (NN) -3222 + (LL) 1080
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -48963.0 ( -85.30 by residue)
QMean score : 0.389
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: