Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------AITCGQVSSS---LAPCIPYVR-------------GGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVN-----PNNAAALPGKCGVSIPYKISASTNCATVK
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL--------DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-------SQPCQM--
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35081 for 488 contacts (-71.9/contact) +
2D Compatibility (PS) -6997 + (NN) 2002 + (LL) 1020
1D Compatibility (HY) -4400 + (ID) 800
Total energy: -44256.0 ( -90.69 by residue)
QMean score : 0.273
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: