Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------DPLPPCTVIV--NQLNPCVPFLTRNVATPS---------------------QTCCGGVRYLANYSSSKGDRISICQCIEGSQSMFPLID------------FSLISNLPASCSVPITLPKITPTFDCSTV
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDE----------CQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN-------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47144 for 603 contacts (-78.2/contact) +
2D Compatibility (PS) -7538 + (NN) 1332 + (LL) 592
1D Compatibility (HY) -400 + (ID) 900
Total energy: -54058.0 ( -89.65 by residue)
QMean score : 0.061
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: