Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCGQVTQNVAPCFNYVKNGGAVPAACCNGVRNLNSQAKTTADRQQTCNCLKNAAGSI-PGLNPSLAAGLPGKCGVSVPYKISTSTNCATVK
1N89 Chain:A ((4-65))
------ASQLAVCASAILSGAKPSGECCGNLRA-----------QQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVP-------------
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21875 for 386 contacts (-56.7/contact) +
2D Compatibility (PS) -6420 + (NN) -3860 + (LL) 1956
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -33749.0 ( -87.43 by residue)
QMean score : 0.236
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: