Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------LSCGEVTSG---LAPCLPYLQ--------------GRGPIGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGID-----TGKAAGLPGVCGVNIPYKISPSTDCSKVQ
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL--------DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-------SQPCQM--
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31523 for 482 contacts (-65.4/contact) +
2D Compatibility (PS) -7058 + (NN) 449 + (LL) 940
1D Compatibility (HY) -3600 + (ID) 1000
Total energy: -41792.0 ( -86.71 by residue)
QMean score : 0.213
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: