Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -------------LSCGDVATQ--LAPCINYLR------------------SAGPLPVACCNGVKNLKNSAATTQDRRTACKCLINA---SKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQVN |
1W2Q Chain:A ((1-127)) | GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS |
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General information:
TITO was launched using:
| RESULT:
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Template: 1W2Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -26581 for 581 contacts (-45.8/contact) +
2D Compatibility (PS) -9008 + (NN) 342 + (LL) 0
1D Compatibility (HY) 0 + (ID) 600
Total energy: -35847.0 ( -61.70 by residue)
QMean score : 0.205
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