Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAAR-------TTADRRAACSCLK---------NAAAGVSGLNAGNAAS-IPSKCSVSI-PYTISTSTDCSRVN------
2D5R Chain:B ((24-139))
-HMQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHWYPEKPYKGSGFRCIHIGEKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFEVSYQIGEKGPVKVLYVD
General information:
TITO was launched using:
RESULT:
Template:
2D5R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23324 for 583 contacts (-40.0/contact) +
2D Compatibility (PS) -9578 + (NN) -170 + (LL) 144
1D Compatibility (HY) -4000 + (ID) 750
Total energy: -37678.0 ( -64.63 by residue)
QMean score : 0.249
(partial model without unconserved sides chains):
PDB file :
Tito_2D5R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D5R-query.scw
PDB file :
Tito_Scwrl_2D5R.pdb
: