Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ALSAAQCKEERRLGLNACKPV------IYGKLPSPACCERVRVS------HVECVCPVITPKLAALIDLDRAIRLIEGCGRRVPRHFKCGS-I---TTP
2RAQ Chain:A ((3-95))
------AKGLIRIVLDILKPHEPIIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSIHSVDEVVAGRTMVEEVTTP
General information:
TITO was launched using:
RESULT:
Template:
2RAQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37264 for 498 contacts (-74.8/contact) +
2D Compatibility (PS) -8327 + (NN) -1290 + (LL) 700
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -48681.0 ( -97.75 by residue)
QMean score : 0.156
(partial model without unconserved sides chains):
PDB file :
Tito_2RAQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RAQ-query.scw
PDB file :
Tito_Scwrl_2RAQ.pdb
: