Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------DFSALAPCDVTQLSPCASAFAGKASPTAACCAKLMSHGPGCLCRYK----DDASLKRLVDARHKRRVFTACKVPVPSC----------------------------------------------
1RPU Chain:A ((9-152))
DTREQANGERWDGGSGGITSPFKLPDESPSWTEWRLYNDENPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEV
General information:
TITO was launched using:
RESULT:
Template:
1RPU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13028 for 401 contacts (-32.5/contact) +
2D Compatibility (PS) -7938 + (NN) -5072 + (LL) 0
1D Compatibility (HY) -800 + (ID) 600
Total energy: -27438.0 ( -68.42 by residue)
QMean score : 0.374
(partial model without unconserved sides chains):
PDB file :
Tito_1RPU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RPU-query.scw
PDB file :
Tito_Scwrl_1RPU.pdb
: