Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPSACSTQLNNLSVCAPFVVPGAPDSTPSADCCTALQTIDD----------ACMCST----------LRIASRLPSHCNLTPVTCDVNA
1SIY Chain:A ((2-76))
---TCGQVQGNLAQCIGFLQKG---GVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVN--------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34864 for 365 contacts (-95.5/contact) +
2D Compatibility (PS) -5808 + (NN) -5366 + (LL) 220
1D Compatibility (HY) -3200 + (ID) 800
Total energy: -49818.0 ( -136.49 by residue)
QMean score : 0.362
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: