Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------VDAMT-CQQAITTLMPCQPFLTGAAPAPTVPCCLAVSNVNTAATT--------------TQARRDLCECFEKAA-----PGFGVK----PEKAKQLPQLCGVTVPV----PIDPTINCKDIQ--------
1Q77 Chain:A ((1-138))
SNAMKVLLVLTDAYSDCEKAITYAVNFSEKLG--AELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREVWEKLTGSTEIPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPSAYLCKVIDGLNLASLIVK
General information:
TITO was launched using:
RESULT:
Template:
1Q77.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20840 for 517 contacts (-40.3/contact) +
2D Compatibility (PS) -9902 + (NN) -1062 + (LL) -28
1D Compatibility (HY) -5200 + (ID) 1250
Total energy: -38282.0 ( -74.05 by residue)
QMean score : 0.321
(partial model without unconserved sides chains):
PDB file :
Tito_1Q77.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q77-query.scw
PDB file :
Tito_Scwrl_1Q77.pdb
: