Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ASTPSSNCESAQMKLVPCLTYVTGSDSKPPTECCSGLKDLNTNN-------PTCLCQLITQLNSTSSGSSNVNVAKVLALPRDCSVTLI-----TSDCPGKDLL
1AFH Chain:A ((3-90))
------SCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNA--AAGVS-GLNAGNAASIPSKCGVSIPYTISTSTDCS-----
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32317 for 564 contacts (-57.3/contact) +
2D Compatibility (PS) -8029 + (NN) -4472 + (LL) 300
1D Compatibility (HY) -3600 + (ID) 1100
Total energy: -49218.0 ( -87.27 by residue)
QMean score : 0.171
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: