Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------AVTGCGQVVSA---LAPCIGYAT------------GGAASPSARCCSGVRGLNSAASSPADRKTACTCLKQQTSGMGGIRPDLVAGIPGKCGVNIPYAISPSTDCSKVR
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMML---NEPMWIRMRDQVMSMAHNLPIECNLM-------SQPCQM--
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20851 for 561 contacts (-37.2/contact) +
2D Compatibility (PS) -8261 + (NN) 2607 + (LL) 792
1D Compatibility (HY) -3600 + (ID) 800
Total energy: -30113.0 ( -53.68 by residue)
QMean score : 0.185
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: