Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGGCNAG--QLSVCAVAITSGSPPSAECCSNLRA-----------QQGCLCQYAKDPNYGRY--ISSPYARQTVASCGIPVPKC
1T12 Chain:A ((1-78))
AITCGQVTSNLAPCLAYLRNTG-PLGRCCGGVKALVNSARTTEDRQIACTC--LKSAA-GAISGINLGKAAGLPSTCGVNIP--
General information:
TITO was launched using:
RESULT:
Template:
1T12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28857 for 394 contacts (-73.2/contact) +
2D Compatibility (PS) -6392 + (NN) -1976 + (LL) 284
1D Compatibility (HY) -3600 + (ID) 900
Total energy: -41441.0 ( -105.18 by residue)
QMean score : 0.377
(partial model without unconserved sides chains):
PDB file :
Tito_1T12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T12-query.scw
PDB file :
Tito_Scwrl_1T12.pdb
: