Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMVAAQCDAGQLVVCAPAILGGAMPTASCCSKLREQEQQGCFCEYLRNPAYAGYINSQTARGAIAACNVTLPQCS
1N89 Chain:A ((1-67))
-----ACQASQLAVCASAILSGAKPSGECCGNLRAQ--QGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVPHC-
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34847 for 433 contacts (-80.5/contact) +
2D Compatibility (PS) -6991 + (NN) -1455 + (LL) 1092
1D Compatibility (HY) -7200 + (ID) 1700
Total energy: -51101.0 ( -118.02 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: