Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-WTVNIPTPQSSCPLANPLSLNVCVDLLGLVHVVL--------GNPSTVECCDIINGLGIDATVCLCTAIHLKVLGLNVDIPLALKLLVTCGRELPN-----GLTC--
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLD---EKCMCPAIMMMLNEPMWIRM--RDQVMSMAHNLPIECNLMSQPCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59385 for 606 contacts (-98.0/contact) +
2D Compatibility (PS) -8835 + (NN) 1345 + (LL) 592
1D Compatibility (HY) -800 + (ID) 700
Total energy: -67783.0 ( -111.85 by residue)
QMean score : 0.271
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: