Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------AECKNNIADLLPCQAAAQSETSTPSTECCTAVGKFKDDPAC---------LCSTIAAAQAAGFTIDAPVAATIPKRCKLDGYPTSCSKSK
1NY8 Chain:A ((1-97))
MIEDPMENNEIQSVLMNALS-LQEVHVSGDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGFLEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
1NY8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16369 for 490 contacts (-33.4/contact) +
2D Compatibility (PS) -8546 + (NN) -5128 + (LL) 56
1D Compatibility (HY) -4000 + (ID) 600
Total energy: -34587.0 ( -70.59 by residue)
QMean score : 0.349
(partial model without unconserved sides chains):
PDB file :
Tito_1NY8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NY8-query.scw
PDB file :
Tito_Scwrl_1NY8.pdb
: