Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACDATNNMGKLLPCRQAAVKNGKDPKQLAGCCDAVKPFSGS-KD----AADCLCQSLLAAQKVDKTVDLHSAIAIPAKCGIPVQ----ANLKCNGMAVPQH
1SIY Chain:A ((6-89))
------VQGNLAQCIGFLQ-KGGVV--PPSCCTGVKNILNSSRTTADRRAVCSCLKAAAG-AV-RGINPNNAEALPGKCGVNIPYKISTSTNCNS------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21903 for 510 contacts (-42.9/contact) +
2D Compatibility (PS) -7967 + (NN) -5498 + (LL) 1100
1D Compatibility (HY) -2000 + (ID) 1100
Total energy: -37368.0 ( -73.27 by residue)
QMean score : 0.224
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: