Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACDATNNMGKLLPCRQAAVKNGKDPKQLAGCCDAVKPFSGS-KD----AADCLCQSLLAAQKVDKTVDLHSAIAIPAKCGIPVQ----ANLNCNGMAVPQH
1SIY Chain:A ((6-89))
------VQGNLAQCIGFLQK-GGVV--PPSCCTGVKNILNSSRTTADRRAVCSCLKAAAG-AV-RGINPNNAEALPGKCGVNIPYKISTSTNCNS------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21543 for 510 contacts (-42.2/contact) +
2D Compatibility (PS) -7967 + (NN) -5507 + (LL) 956
1D Compatibility (HY) -2000 + (ID) 1200
Total energy: -37261.0 ( -73.06 by residue)
QMean score : 0.218
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: