Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GCGPKLGVLLPCLPFLQGQGSNPTQPCCNGLETVVKSNP-------ACLCALVNS---QLGNRINITLALSLPSLCNLAGV----TIDLCN
1AFH Chain:A ((3-90))
SCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAAAGVS-GLNAGNAASIPSKCGVSIPYTISTSTDCS
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42992 for 522 contacts (-82.4/contact) +
2D Compatibility (PS) -7465 + (NN) -1941 + (LL) 240
1D Compatibility (HY) -2000 + (ID) 1150
Total energy: -55308.0 ( -105.95 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: