Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
TVTCSQVTQLL-----------NPCVNYLIYGGAIPSSCCAGVKQVKAASKTGEDRRTACSCIQDGAAMI-----PGIDYNLVASLPSQCGVSL-PYKISPSTDCSRIN--------------
3FKE Chain:A ((218-340))
DISAKDLRNIMYDHLPGFGTAFHQLVQVICKLGKDSNSLDIIHAEFQASLAEGDSPQCALIQITKRVPIFQDAAPPVIHIRSRGDIPRACQKSLRPVPPSPKIDRGWVCVFQLQDGKTLGLKI
General information:
TITO was launched using:
RESULT:
Template:
3FKE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44102 for 580 contacts (-76.0/contact) +
2D Compatibility (PS) -9288 + (NN) -816 + (LL) 0
1D Compatibility (HY) -4400 + (ID) 850
Total energy: -59456.0 ( -102.51 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_3FKE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FKE-query.scw
PDB file :
Tito_Scwrl_3FKE.pdb
: