Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VITCPDAD--ITLKSCLPYVAHPTQW---PPLECCTAVLGLTARAVTREDRQAVCKCLLGLMNGIPGLDLTAFAAVPILCAANIGYIIRPNMDCNSVP
1D8J Chain:A ((1-81))
ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMT--------------EALVNNPKIEVIDGKYAFKPKYNVR---
General information:
TITO was launched using:
RESULT:
Template:
1D8J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51369 for 465 contacts (-110.5/contact) +
2D Compatibility (PS) -7512 + (NN) -805 + (LL) 560
1D Compatibility (HY) -2400 + (ID) 500
Total energy: -62026.0 ( -133.39 by residue)
QMean score : 0.377
(partial model without unconserved sides chains):
PDB file :
Tito_1D8J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D8J-query.scw
PDB file :
Tito_Scwrl_1D8J.pdb
: