Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADNLYLYKGSVKITEMTLNLNEAKIIVYE--DSGGNKYTLDASGISTL----TNIDDIKLSDLLEGKVKFIYQKKDSNAI--------QIKGLGNIISTLLATQKAVDGESILAEEVSKKPVVDTILKATDLVNLNKNIVETELEDKFVKKDASNLTDAVNQ-----KAFAEKILPAKDGQKSILVEK-----LGGLLGEPGAVYGDSNPKITAKDFLAEKASLVKTDGSNIVTQTDKGKALVEAILNAKEPISNKEVKIVETELAKTFVKTADLGTPAVAGKVLDAKDGQKSILVEKLGRFLDTTSTEYSNQTAKVFSGEKGTKPTAEEVVTKLLANNKKDLTDEVAQNPGLRAAVTSNSGLRGTVIDNLKGDTDFKTDITIQVDAKDPAFQGFVREIISQPSFEIPTSDDAPLSWDWI |
| 1A6D Chain:A ((129-352)) | ------------------LAVNEARKIIDEIAEKSTDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVH----SKMPDVVKNAKIA-LIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKI--KKSGANVVLCQKGIDDVAQHYLAKEG-IYAVRRVKKSDMEKLA------KATGAKIVTDLDD---LTPSVLGEAETVEERKIGDDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1A6D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 33371 for 1219 contacts (27.4/contact) +
2D Compatibility (PS) -20979 + (NN) -1246 + (LL) 2808
1D Compatibility (HY) -8800 + (ID) 3000
Total energy: 2154.0 ( 1.77 by residue)
QMean score : 0.142
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