Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFPKKVLGEEWEEGRKFNKLYQKDKQRKLIKRQGILRESQNGIQVYKEDPEIVEIAKPIGKWTQMVMQDGGLMQRLAQLMKRESGRKGFWELFVEAQASTHGKHKGKGR
3SQG Chain:C ((208-262))
---------------------------ELLKKTTMYRNAQGGVWQEADDPESMDVTAQI-HWKRSV----GGFQPWAKMKDIKGGKKDVGVKNLKLFTPRGGVE-----
General information:
TITO was launched using:
RESULT:
Template:
3SQG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1480 for 249 contacts (-5.9/contact) +
2D Compatibility (PS) -5327 + (NN) 2481 + (LL) 2168
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -5758.0 ( -23.12 by residue)
QMean score : 0.311
(partial model without unconserved sides chains):
PDB file :
Tito_3SQG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SQG-query.scw
PDB file :
Tito_Scwrl_3SQG.pdb
: