Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQYTFRIDNKDPLYKKLIKLPTAYYRLKHDGNKHNIHSNNNVILEIGNNTNGVKLRWENDKIVLHKGSSALY
3BPD Chain:A ((37-62))
---------------------------------------VNIHLSEIDQATENIKITILGNNLDYEQIKGVIE
General information:
TITO was launched using:
RESULT:
Template:
3BPD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1754 for 87 contacts (20.2/contact) +
2D Compatibility (PS) -2582 + (NN) 3030 + (LL) 2224
1D Compatibility (HY) -1600 + (ID) 250
Total energy: 2576.0 ( 29.61 by residue)
QMean score : 0.085
(partial model without unconserved sides chains):
PDB file :
Tito_3BPD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BPD-query.scw
PDB file :
Tito_Scwrl_3BPD.pdb
: