Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEEKDSNFAMEKPGNNYVGCISSENGECKNFYDLKLNFVKYNSGNNSSLYPYYYNLENFGNFLEVDVKLRELIGLKKGLKD
1V54 Chain:F ((56-73))
---------------RIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1V54.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2550 for 64 contacts (-39.8/contact) +
2D Compatibility (PS) -2067 + (NN) -1679 + (LL) 1376
1D Compatibility (HY) -2000 + (ID) 250
Total energy: -7170.0 ( -112.03 by residue)
QMean score : 0.271
(partial model without unconserved sides chains):
PDB file :
Tito_1V54.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V54-query.scw
PDB file :
Tito_Scwrl_1V54.pdb
: