Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHLIVGLGNPGSQYELTYHNIGFIIVDAICKHWNFQ-SFSKKADCLITSSVINDNKIMLMKPYSFMNNSGIPVARIRNFYKFSLDNVIVIHDDADLEPGRIKIKKGGGSAGHNGLKSIDSSIGN-DYWRLRFGIGRSDSQRSLADYVLSKFSNLD--DVIPLVERIAQNIHLMLQGNNIAFTNSIV
3TD2 Chain:A ((6-178))
--LVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAALGTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNR--
General information:
TITO was launched using:
RESULT:
Template:
3TD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135245 for 1394 contacts (-97.0/contact) +
2D Compatibility (PS) -17868 + (NN) -1021 + (LL) 0
1D Compatibility (HY) -10400 + (ID) 3200
Total energy: -167734.0 ( -120.33 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_3TD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TD2-query.scw
PDB file :
Tito_Scwrl_3TD2.pdb
: