Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQFLKENRAKRSLEIDSTVITLAIITLSLALVVYSVIKGVQKVAAKKTDNILSEVESQKVVSPRQKV
2IBM Chain:A ((339-374))
---------AKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRP
General information:
TITO was launched using:
RESULT:
Template:
2IBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8164 for 98 contacts (-83.3/contact) +
2D Compatibility (PS) -3885 + (NN) 923 + (LL) 1016
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -12760.0 ( -130.20 by residue)
QMean score : 0.276
(partial model without unconserved sides chains):
PDB file :
Tito_2IBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IBM-query.scw
PDB file :
Tito_Scwrl_2IBM.pdb
: