Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFLALPALFLWLLNWTLVKEIWRFNDLMQEAPEEERQLIIYR-------LVDTLPFITQ--TTYDLSAVASVNLSVNKLIEKYGENLSKDGFYTQLNRENTTNIEGYIKQSNEFKAEEKSHALKCLGFINRIEDKFQDNCSKLTLKQADILY
2B9B Chain:A ((13-68))
-------------------------------PTNVRQLMYYTEASSAFIVVKLMPTIDSPISGCNITSISSYNATVTKLLQPIGENLETIRNQLIPTRRRFAGVVIGLAALGVATAAQVTAAVALVKANENAAAILNLKNAIQKTNAAVADV
General information:
TITO was launched using:
RESULT:
Template:
2B9B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4218 for 149 contacts (-28.3/contact) +
2D Compatibility (PS) -4999 + (NN) -589 + (LL) 3684
1D Compatibility (HY) -6000 + (ID) 850
Total energy: -12972.0 ( -87.06 by residue)
QMean score : 0.311
(partial model without unconserved sides chains):
PDB file :
Tito_2B9B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B9B-query.scw
PDB file :
Tito_Scwrl_2B9B.pdb
: