Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPARSAEDVITSLIEFVNKRKVTITREEMLKIAQLVRIKLSNDEIEHYSKEL-TMLDWI--HDILLRVNTKDVSPIRYGSIDKDIHVRDDVVNFQSMKEEILSNTK-SEHGYFVVPKVIND
3IP4 Chain:C ((4-94))
-----------------------VTREEVEHIANLARLQISPEETEEMANTLESILDFAKQND---SADTEGVEPT-YHVLDLQNVLREDKAIKGIPQELALKNAKETEDGQFKVPTI---
General information:
TITO was launched using:
RESULT:
Template:
3IP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12926 for 344 contacts (-37.6/contact) +
2D Compatibility (PS) -9581 + (NN) -3940 + (LL) 2780
1D Compatibility (HY) -2000 + (ID) 1550
Total energy: -27217.0 ( -79.12 by residue)
QMean score : 0.363
(partial model without unconserved sides chains):
PDB file :
Tito_3IP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IP4-query.scw
PDB file :
Tito_Scwrl_3IP4.pdb
: