Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSITLHSQKDFEFMRKAGRLAAETLDFIAPYVKVGVTTNKLNDLCHDFIV-KAGAIPAPLNYKGYPKSICTSKNAVVCHGIPDD-KPLKDGDILNIDVTVILNGWYGDTSRMFWAGKPSIKAKRLCDATYVALMEAIKQVKPGNKLNEIGLAVEKYIRDFGYSIVRSYCGHGIGKVFHAPPNVVHFYDQGESLVLKEGMFFTIEPMINAGKHETLLSRLDNWTVTTRDLSLSAQFEHTLGVTEDGVEIFTLSPKNWHFPPYN
2EVC Chain:A ((4-250))
---SIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKE-IRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIIS
General information:
TITO was launched using:
RESULT:
Template:
2EVC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152849 for 2164 contacts (-70.6/contact) +
2D Compatibility (PS) -26767 + (NN) -13526 + (LL) 436
1D Compatibility (HY) -25600 + (ID) 7000
Total energy: -225306.0 ( -104.12 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_2EVC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EVC-query.scw
PDB file :
Tito_Scwrl_2EVC.pdb
: