Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLLASLPEGHTIIGLQFENLMLNNRKSIPNILGIDEIISENLFFQRKTGNSAIYQIDYIIRTKFNTLYICEIKFSKNRIGHSIM
4N2K Chain:A ((542-567))
---------------------MSSKRITINKILSNESLVQENLYFQRCLDWNRDILKKELGLTEQDIIDLPALFKMDEDHRARAF
General information:
TITO was launched using:
RESULT:
Template:
4N2K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1523 for 98 contacts (-15.5/contact) +
2D Compatibility (PS) -2629 + (NN) 1410 + (LL) 1432
1D Compatibility (HY) -2800 + (ID) 550
Total energy: -4660.0 ( -47.55 by residue)
QMean score : -0.110
(partial model without unconserved sides chains):
PDB file :
Tito_4N2K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N2K-query.scw
PDB file :
Tito_Scwrl_4N2K.pdb
: