Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELNKIAASILLSGLIIMIVSNVVDMLYNPEKYKIEHQTMVATGSNEPQKKIEQVALDIGALMQSASLEKGKSI-AKKCIACHSFDKGGANKVGPNLWNIVGNKKAHLGDSFNYSKAMLEKGGKWGYEELFAFLKSPKDYIKGTRMAFAGISNPQEIADLVSYLRQLSDNQVALPK
1U75 Chain:B ((1-103))
-----------------------------------------------------------------GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQ-APGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKATNE------
General information:
TITO was launched using:
RESULT:
Template:
1U75.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17103 for 695 contacts (-24.6/contact) +
2D Compatibility (PS) -10466 + (NN) 115 + (LL) 6416
1D Compatibility (HY) -6400 + (ID) 2200
Total energy: -29638.0 ( -42.64 by residue)
QMean score : 0.381
(partial model without unconserved sides chains):
PDB file :
Tito_1U75.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U75-query.scw
PDB file :
Tito_Scwrl_1U75.pdb
: