Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSISSPRINVMLDSVRSASKQLMRDFNELQISNVKSADFINKTYSRSKQTIYNCLHDYKQDYGFIFEDDIDQEAKE---KDYTWFIMPIEGRENFSSRMVYFAVSVCLVHKNKVVAAVVNTPALRETFWAEEKKGAFL----------EDFRSRHIKMRMKSHEG--SLIDVSGNLLNKLLPGNSNIRSVGSTVLGFTYLAAGRYSGIVYSGVNKYKALLGRLLLQESAGRLTEDNGFIIAGDVKLT
1IMB Chain:A ((41-240))
-------------------------------------DLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHRFPFVAVSIGFAVNKKIEFGVVYSCVEGKMYTARKGKGAFCNGQKLQVSQQEDITKSLLVTELGSSRTPETVRMVLSNMEKLFCIPVHGIRSVGTAAVNMCLVATGGADAYYEMGIHCWDVAGAGIIVTEAGGVLMDVTGGPFDLMSRRV
General information:
TITO was launched using:
RESULT:
Template:
1IMB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89193 for 1413 contacts (-63.1/contact) +
2D Compatibility (PS) -19789 + (NN) -2489 + (LL) 2776
1D Compatibility (HY) -10400 + (ID) 2150
Total energy: -121245.0 ( -85.81 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_1IMB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IMB-query.scw
PDB file :
Tito_Scwrl_1IMB.pdb
: