Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLPVVHLLPNNDLAQFNYRHVKIDGILSDIELYVFAGQSGYHALSPMLLTTGRYMLVNKGIVREKEEKKAKIAKVVADGVLYCDSSKSKSWLIKNDIALNTWFTLSTEEISNELGIELEKCILWQKGFSGKLAIQPMKHLEYAITWFALSLIWLIMCIAYYRQNKCHLSS
1N6P Chain:A ((41-98))
--------------AAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1N6P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9429 for 261 contacts (-36.1/contact) +
2D Compatibility (PS) -6443 + (NN) -2109 + (LL) 2884
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -18397.0 ( -70.49 by residue)
QMean score : -0.121
(partial model without unconserved sides chains):
PDB file :
Tito_1N6P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N6P-query.scw
PDB file :
Tito_Scwrl_1N6P.pdb
: