Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIKVGVIGCSGRMGKRILNELITNTQVEIAGAVARLGSKYIGSDIGSAVYHSSNLGIKVTSSISDVFESSDVVIDFTTKECMLACLKAAMKFKTPLVSGTTGIESINL---KKYAAKIPILWSANMSVGVNVLLKLVKKAAEFLDNEYDVEIWEMHHNLKKDSPSGTAMEFGKAIANALKVDFQPYQHSHNSSNIREKGKIGFAVSRGGGVVGDHSVMFINSDERIELNHKAIDRTTFARGAVRAAIWLYENKRETPGLYSMQDVI
1VM6 Chain:A ((13-224))
--MKYGIVGYSGRMGQEI---------------------QKVFSEKGH------ELVLKVDVNGVEELDSPDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKEVPVVQAYNFSIGINVLKRFLSELVKVLED-WDVEIVETHHRFKKDAPSGTAILLESALGKSVPI------HS----------------LRVGGVPGDHVVVFGNIGETIEIKHRAISRTVFAIGALKAAEFLV---GKDPGMYSFEEVI
General information:
TITO was launched using:
RESULT:
Template:
1VM6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127433 for 1718 contacts (-74.2/contact) +
2D Compatibility (PS) -22642 + (NN) -10496 + (LL) 3572
1D Compatibility (HY) -19200 + (ID) 4300
Total energy: -180499.0 ( -105.06 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_1VM6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VM6-query.scw
PDB file :
Tito_Scwrl_1VM6.pdb
: