Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVMNTYAKSGVDLKLYNKLMKEVKLVVDENKREEVISEVGSFSALFDFAALSKKYDHPVLVSSTDGVGTKLLIAQEVDKH-------DTIGIDLVAMCVNDLLAQGATPLFFLDYFATGALNK-----DVLLSVVQGITEGCKQAK-----ITLVGGETAEMPGMYGNNHYDLAGFVVGVVDKSKILPNYGVMRAGDYIVGLESSG-----------IHSNGFSLVRH------IFEDLGISYNDLSPWD-------------NQL---WGEVLLKPTKIYVDS----LLPIMSQVKGIAHITGGG------LIDNVPRILPKNLFADVDISSLEWPDIFLWLTKEGKVEKREMLRTFNCGIGMILIIDPENMQGVKNHFQKLGEKIEIIGKLNEKYNPSFNGVVS |
| 3MDO Chain:A ((52-372)) | ------------------------------------------------------------IMHADGAGTKSSLAYMYWKETGDLSVWKGIAQDALIMNIDDLLCVGAVDNILVS--STIGRNKLLVPGEVISAIINGTDELLAELREMGVGCYATGGETADVGDLVRTIIVDST--VTCRMKRSDVIDNKNI-QGGDVIVGLASSGQATYEKEYNGGMGSNGLTSARHDVFSKYLAKKYPESYDAAVPKELVYSGGLKLTDKIEELGIDAGKMVLSPTRTYAPVIKVLLDKLRSQIHGMVHCSGGAQTKVMHFVEN-KRVTKDNLFP--------IPPLFRTIQEQSGTDWSEMYKVFNMGHRMEIYIAPEHAEEVIGISKSFGIDAQIVGFVEEADKNELIIESE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -169306 for 2059 contacts (-82.2/contact) +
2D Compatibility (PS) -27816 + (NN) -9616 + (LL) 5956
1D Compatibility (HY) -12800 + (ID) 4050
Total energy: -217632.0 ( -105.70 by residue)
QMean score : 0.431
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