Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNKYYDSNNIFAQILRGELPCKKVYEDEDVLAFYDKYPDAPVHILVVPK---SQYISYDDFIFKASAEEIVGFFKTVREITYKYNLEKTGYRLVTNCGENGEQVVPHFHMHILGGKRLGKHVNL
4RHN Chain:A ((4-110))
-------GDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAAED-----ADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG-
General information:
TITO was launched using:
RESULT:
Template:
4RHN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59932 for 722 contacts (-83.0/contact) +
2D Compatibility (PS) -11479 + (NN) -8302 + (LL) 776
1D Compatibility (HY) -6000 + (ID) 2150
Total energy: -87087.0 ( -120.62 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_4RHN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RHN-query.scw
PDB file :
Tito_Scwrl_4RHN.pdb
: