Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MASNPEEKSNDRQKALDNAISQIEKAFGKGAIMKLKQNPVEKIDTISTGSIALDSALGVGGLPKGRIVEIFGPESSGKTTLALHVIAEAQKKGGLCAFIDAEHALDVMYARKLGVNTDNLVISQPDTGEQALHIVEYLVCSSAVDVIVVDSVAALTPRAEIEGDMGDQHVGLQARLLSHGLRKLTSAVSKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSVRLDIRKVGAIKDKESIKGNETRVKVVKNKVAPPFREAKFDIMYNEGVSKLGEIIDIGAKLGVLEKAGAYYSYNNTRLGQGRENVKNYFKANKEVANEVEAKIRDLLGNSDNSITMEEESRQLLEEAVF |
2ODN Chain:A ((5-330)) | --------APDREKALELAMAQIDKNFGKGSVMRLGEEVRQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGE--DSHVGLQARLMSQALRKMTGALNNSGTTAIFINQ--------------TTGGKALKFYASVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGKENARKFLLENTDVANEIEKKIKEKLG--------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2ODN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -133784 for 2498 contacts (-53.6/contact) +
2D Compatibility (PS) -33947 + (NN) -15479 + (LL) 2964
1D Compatibility (HY) -28800 + (ID) 9200
Total energy: -218246.0 ( -87.37 by residue)
QMean score : 0.501
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