Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLEKIQSDVEDIWKNRSKLSNRSVKRAARVIIKKVIKLLDSGKIRVAERLSDGKWIVHTWIKQAISLYFLTEESKMIDHT-GWWFDKVNNKFDGWNEEEFHQSKIRAVPGCFVRQSAYVGTNVVLMPSFINVGAYISSGTMIDTWSTIGSCAQIGKNCHVSGGVGIGGVLEPIQASPVIIEDNCFIGARSEVAEGVIIREGSVLGMGVFIGASTKIIDRETNKVFYGEVPPYSVVVPGSTLSAN-NISIYCAIIVKKVDEKTRQKTSINEILRD
1TDT Chain:A ((1-256))
--MQQLQNVIESAFERRADITPANVDTVTREAVNQVIGLLDSGALRVAEKI-DGQWVTHQWLKKAVLLSFRINDNKVMDGAETRYYDKVPMKFADYDEARFQKEGFRVVPPATVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPSKDGSYSLYCAVIVKKV----------------
General information:
TITO was launched using:
RESULT:
Template:
1TDT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -221600 for 2019 contacts (-109.8/contact) +
2D Compatibility (PS) -28177 + (NN) -14316 + (LL) 1384
1D Compatibility (HY) -28800 + (ID) 6750
Total energy: -298259.0 ( -147.73 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_1TDT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TDT-query.scw
PDB file :
Tito_Scwrl_1TDT.pdb
: