Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKILISLLFILIFYSSANAFTLDDKLRDKNMEKRATNLFEMIKCPICSGESLSESGSQVAYNMRKMIREKISDGY--TDEQITSEL--RNSYGDSIIIVPPVKFSTYILWLIPLVIPLIGCFLIRNIIK
3SQX Chain:A ((222-304))
--------------------TLDDKV-----QKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKI
General information:
TITO was launched using:
RESULT:
Template:
3SQX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3350 for 296 contacts (11.3/contact) +
2D Compatibility (PS) -8312 + (NN) 720 + (LL) 2620
1D Compatibility (HY) -5600 + (ID) 1150
Total energy: -8372.0 ( -28.28 by residue)
QMean score : 0.126
(partial model without unconserved sides chains):
PDB file :
Tito_3SQX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SQX-query.scw
PDB file :
Tito_Scwrl_3SQX.pdb
: