Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNRSTDTKRKEMIELKGPEICTDRSRENLIVCLHGRGSSGNNF-VHLAKVMSKSLP--NSCFVAPNAPSKREI----GNGYQWFS---LEDRSEEVLYNGVKNAASIVNHFIDTKLKEFSLKDTQLSLVGFSQGAMLAIHTALTRPQCCASVVAYSGKFLSPSRVAPKIKSR----PNVCVIHGDADNVVPFSFFDLTVKALKENGVNVEGYPIRTLGHLINKEGIKLGVEFIKKNFKK
3U0V Chain:A ((24-215))
------------------------------LIFLHGSGDSGQGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHL-ESIDVMCQVLTDLIDEEVKS-GIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASAVYQALQKSNGVLPELFQCHGTADELVLHSWAEETNSMLKSLGVTTKFHSFPNVYHELSKTELDILKLWILTKLP-
General information:
TITO was launched using:
RESULT:
Template:
3U0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117035 for 1420 contacts (-82.4/contact) +
2D Compatibility (PS) -19060 + (NN) -6577 + (LL) 2220
1D Compatibility (HY) -13200 + (ID) 2400
Total energy: -156052.0 ( -109.90 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_3U0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U0V-query.scw
PDB file :
Tito_Scwrl_3U0V.pdb
: