Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDENINFETDTTFALIKEAQRRKYKVFAYAPSNLALKLNQPIALAQKVSVDDCNFTSKEDVVINLNEMDIIFIRQDPPFDMRYITTTYILEKTRALVINNPTEMRNCPEKLITSLFP----ELIPPTLITENISMIRDFYHDYR-GIILKPLYSYGGNDVIRIQNENSIQVVVELMIT---KYKCPVIAQAFCKNVNKDKRILLLDGQPIGVMKRVPRVSGEIRTNLRLGASFEPVEMNDRDNEICNKIGPELKKRGLIFVGIDIVDD----FLLEINITSPTGVVYINKLYNTSLEKDLWNTFEEKASSHISQPSL |
| 3VPD Chain:A ((10-280)) | --------RPDERMLFERAEALGLPYKKVYVPALPMVLGE-------------R-------PEALEGVTVALERCVSQS--RGLAAARYLTALGIPVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEAFGYPVVLKPVIGSWGRLLAKVTDRAAAEALLEHKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRS---AHWITNTARGGQAENCPLTEEIARLSVGAAEAV---GGGVVAVDLFESERGLLVNEVNHTM-E-FKNSVHTTGVDIPGEILRYAWEVARG------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VPD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -150591 for 2063 contacts (-73.0/contact) +
2D Compatibility (PS) -27297 + (NN) 477 + (LL) 2384
1D Compatibility (HY) -6400 + (ID) 1950
Total energy: -183377.0 ( -88.89 by residue)
QMean score : 0.421
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