Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDYILASLSLPFFITENYLLITALVPLLSAVVILFTGKWPTVSNGITVASSVLLFVYTCLCTLYWAYGDHSQFILINFGNNLHVSLKLESTGVVFSLLISFLWILTSIYTIYYMQNNYPDSNYSDFLCFLLVSISCTMFIAFSGDLLTTFVFYELLTISTYPLVTYNATNESTIAGRYYFGVLFFSSLVLFFPVLGLLYNEFHTLDFVSSGIFEFDTSLVTFTAVCFTMLIYGLGKAALMPMHFWLPRAMVAPTPVSALLHAVAVVKSGAFIIVKVILYTFGIDNLQRFAQQNWFAG--GWLPYAAGFTIIAASLIALKQKELKR--LLAYSTVSQLSYIILFASIFSDLSARVAIFQLVCHAFAKITLFFIAGSIITKTGEKYIDRIHGIGRSMPVTMVAFAIGALSMIGVPPASTFWGKFLIFQAVFNSGNIALSVFVTLVLTVGTVLNAMYFLPIIYNAFFSKSSKNFFIKKIPVFLILPPVITAICTFIIFLVTPFILPLC |
4ELP Chain:A ((142-196)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DLPRFAREKGLVGRVGWTPTYSSFQDMVAGMIALYGEEKTREWLLAMKALAPKAYPSNPAMLDAIRAGEVDLGSTNHYYVVRFRRAGYRLGMHHFRDGDAGNLALVTGAGLLKTSKNLAAATRFLTYLLSPQAQQYFVGNIGEYPLVKGVALDPNLLPLEEALAKSPKLDLEKLPLDRALRLLRETGVL-------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4ELP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -7720 for 255 contacts (-30.3/contact) +
2D Compatibility (PS) -5608 + (NN) -2574 + (LL) 27956
1D Compatibility (HY) -3200 + (ID) 950
Total energy: 7904.0 ( 31.00 by residue)
QMean score : 0.075
|
|
|