Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIHSDSPRQCLEEIIKSASAKFNESIDIAVNLGIDSRKSEEQVRGTVVLPKGIGKDIKVAVFTQGKHLLEAEKAGANIVGGEDLVQEIKKGKKLDVDWCITTPDFIAKI-TPIAKILGAKGLMPNPKFGTMTSNVAEAIKTIKSGQIKFRTDKNGIIHGKLGNIKFSVDDLLKNLKAFLKVIKSNKPISVKGVYFKSVFLNSTMGKAYKMSKVEDII
3U56 Chain:A ((34-226))
------------------ATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGW-MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTVMGPSVRINPHS---
General information:
TITO was launched using:
RESULT:
Template:
3U56.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96330 for 1496 contacts (-64.4/contact) +
2D Compatibility (PS) -21096 + (NN) -14975 + (LL) 1632
1D Compatibility (HY) -15200 + (ID) 4000
Total energy: -149969.0 ( -100.25 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_3U56.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U56-query.scw
PDB file :
Tito_Scwrl_3U56.pdb
: