Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSFDERKILRTNFSNQPMISGGQSCSSDTCNKKSDLYKDTRSDCDSNNSSAQVNNSTQILLDDLPPQKIVKELDRFIIGQDDAKRAVAIALRNRWRRNKVPLPLRDEIIPKNILMIGHTGVGKTEIARRLAKLAGAPFIKVEATKFTEIGYVGRDVDSITRDLVDAAIVLVKEKARKALAKKALNLAEKIIVNSMV-------GENATEE----SKKTYRERLRNKEFEDGEVSINVRESKSMLPTFDIPGMPGRQVGVVNVTELMGKMFNGGKKTKTITVKVKEAREILINEESERLMDEDKIIKEAIDLVSNEGIVFLDEIDKIAARTEVKG-EVNREGVQRDLLPLLEGTTVSTKYGYVKTDYILFIASGAFHLSKPSDLLPELQGRLPIRVELKALTQEDLIKILKEPESSLLKQYIALMKTENVTLEFTDDGIETIAEIAFTVNREVENIGARRLHTIMEKLLDEISFIASEKNGEKFVIDSKYVKDKLESISKQLDLSRFIL |
| 1HQY Chain:E ((9-449)) | --------------------------------------------------------------EMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIE----------------------------------------KQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1HQY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -199046 for 3083 contacts (-64.6/contact) +
2D Compatibility (PS) -42048 + (NN) -13660 + (LL) 3844
1D Compatibility (HY) -36800 + (ID) 11450
Total energy: -299160.0 ( -97.04 by residue)
QMean score : 0.583
|
|
|