Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLPATPDNSTAVAIIPIAAILGIIPIATSVAPIAPNNNAKPIVHPPEKVLEGC--CFCEEIMLVYYKTVARCFVFCANYYYFHHLQTFFEMELYYL
2LRD Chain:A ((30-49))
----------------------------------------PCVLAALKAAEGCASCFCEDHCHGVCKDLHLC------------------------
General information:
TITO was launched using:
RESULT:
Template:
2LRD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1622 for 63 contacts (-25.7/contact) +
2D Compatibility (PS) -1776 + (NN) -1938 + (LL) 5272
1D Compatibility (HY) -1600 + (ID) 500
Total energy: -2164.0 ( -34.35 by residue)
QMean score : 0.266
(partial model without unconserved sides chains):
PDB file :
Tito_2LRD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LRD-query.scw
PDB file :
Tito_Scwrl_2LRD.pdb
: