Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHASTGKGSKIKYSRVLFKISGEALMGSRPFGHDMELIDQLCKDISDIYKLGVQVCIVVGGGNIFRGASASLSGCERASSDYIGMLATIINALILQNFLEKNSVNSKVLSAIPMVTICEPYIRRKAIHHLEKGRVVIFAAGTGNPFFTTDTAAALRAVETNCDAILKGTQVNGVYSADPKKNEDAVMYDRLSYMDLLTRDLKVVDASAISLARENSIPIIVFSL-KEEKIVNIVKGHGTYTIVSDCE
1YBD Chain:A ((4-237))
---------QIKYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC--
General information:
TITO was launched using:
RESULT:
Template:
1YBD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -223447 for 1952 contacts (-114.5/contact) +
2D Compatibility (PS) -26204 + (NN) -15702 + (LL) 8
1D Compatibility (HY) -22000 + (ID) 6150
Total energy: -293495.0 ( -150.36 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_1YBD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YBD-query.scw
PDB file :
Tito_Scwrl_1YBD.pdb
: