Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQSIPALPVGDIKKSIGFYCDKLGFTLVHHEDGFAVLMCNEVRIHLWEASDEGWRSRSNDSPVCTGAESFIAGTASCRIEVEGIDELYQHIKPLGILHPN---------TSLKDQWWDERDFAVIDPDNNLISFFQQIKS
1BYL Chain:A ((4-121))
LTSAVPVLTARDVAGAVEFWTDRLGFSRDFVEDDFAGVVRDDVTLFISAVQDQ-----------------VVPDNTLAWVWVRGLDELYAEWSE--VVSTNFRDASGPAMTEIGEQPWG-REFALRDPAGNCVHFVAE---
General information:
TITO was launched using:
RESULT:
Template:
1BYL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77907 for 749 contacts (-104.0/contact) +
2D Compatibility (PS) -11725 + (NN) -1947 + (LL) 500
1D Compatibility (HY) -8800 + (ID) 1550
Total energy: -101429.0 ( -135.42 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_1BYL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BYL-query.scw
PDB file :
Tito_Scwrl_1BYL.pdb
: